PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0109s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 277aa    MW: 31091.9 Da    PI: 10.6136
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0109s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-1720110198
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkv++p++++   rl +pk f+e++ +g+  ++  + l  + g++W+v +    k++  ++ kGWk Fvk n + + Df+vF++ g++ 
  Kalax.0109s0010.1.p  20 FFKVFVPEYSS--VRLKIPKGFVENNmKGE--KGNCVNLVVSGGQKWRVGF--VVKRKDWFFYKGWKAFVKGNAVSSFDFLVFRYLGSMA 103
                          89999777766..569*******9885444..55579999***********..66666678999***********************999 PP

                          E..EEEEE- CS
                   B3  90 felvvkvfr 98 
                          f  +v++f 
  Kalax.0109s0010.1.p 104 F--HVSIFG 110
                          9..999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-2415114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2115114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.63318112IPR003340B3 DNA binding domain
CDDcd100175.64E-1718109No hitNo description
SMARTSM010196.8E-1320112IPR003340B3 DNA binding domain
PfamPF023624.3E-1420109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-6171273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-9172273IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAGAGGVGRF GEEHDRQPQF FKVFVPEYSS VRLKIPKGFV ENNMKGEKGN CVNLVVSGGQ  60
KWRVGFVVKR KDWFFYKGWK AFVKGNAVSS FDFLVFRYLG SMAFHVSIFG PNGCAKLSAS  120
SGDLPKAVGV DTEKRRQNRQ NLLKRVQMGS EKRGPGRHHV FTPDEQKAAD SFTSSLPFFV  180
KTLAWKSKQS PIMYLPHSSL KQHSITCSHN QRIVLRSLDG YRQQVKIGKY PYVCSLGEGL  240
TQFMRHVNAS DGDVLIFQVL SRFPLEMLVQ IADKTT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-13B3 family protein